Interactive Cell Selection for Seurat Objects — select_cells_interactive • BadranSeq

Usage

select_cells_interactive(
  object,
  reduction = c("umap", "tsne", "pca"),
  color_by = "Idents",
  return_cells = FALSE
)

Arguments

object: Seurat object with dimensionality reduction computed.
reduction: character. Reduction to use ("umap", "tsne", "pca").
color_by: character. Metadata column for coloring (default: "Idents").
return_cells: logical. Return cell names instead of Seurat subset.

Value

Subsetted Seurat object or character vector of cell names.

Examples

if (FALSE) { # \dontrun{
seu_subset <- select_cells_interactive(seurat_obj)
cell_names <- select_cells_interactive(seurat_obj, return_cells = TRUE)
} # }